C57BL/6N-Tg(1.28HBV)/Vst乙肝病毒转基因小鼠的转录组学分析
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1.上海中医药大学附属曙光医院肝病研究所;2.上海市中医临床重点实验室;3.肝肾疾病病证教育部重点实验室

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国家自然科学基金(82205052);上海市科委启明星计划扬帆专项(22YF1449300);上海中医药大学预算内项目(2021LK081);上海市临床重点专科建设项目(shslczdzk01201)。


Transcriptomic analysis of C57BL/6N-Tg(1.28HBV)/Vst Hepatitis B virus transgenic mice
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1.Institute of Liver Diseases,Shuguang Hospital affiliated to Shanghai University of Traditional Chinese Medicine;2.Shanghai Key Laboratory of Traditional Chinese Clinical Medicine;3.Key Laboratory of Liver and Kidney Diseases,Ministry of Education

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    摘要:

    【摘要】 目的 观察C57BL/6N-Tg (1.28mer HBV) /Vst乙型肝炎病毒(Hepatitis B virus,HBV)转基因(HBV-Tg)小鼠模型的特征,并分析HBV-Tg小鼠模型的转录组学特点。方法 以10只雄性HBV-Tg小鼠作实验组,10只野生型小鼠作对照组。以血清HBV DNA、HBsAg、HBeAg水平和肝组织HBsAg、HBcAg表达情况评价模型小鼠病毒学特征,检测血清ALT、AST,肝组织HE、天狼猩红染色及肝组织 Hyp 含量评估小鼠肝脏炎症及纤维化程度。两组各随机选择3例肝组织样本提取RNA进行高通量转录组测序。经R软件分析获得表达显著的差异基因,经GO和KEGG分析获得差异基因功能富集情况,再采用实时荧光定量PCR(qRT-PCR) 对差异显著的基因进行验证。 结果 与正常组比较,模型组ALT、AST水平均有所升高,以ALT更为显著(P < 0.05);模型组肝组织HE染色可见肝细胞核增大,个别肝细胞出现肿胀。天狼猩红染色结果显示,HBV转基因组汇管区及小叶间出现少量胶原沉积,呈细线状。通过筛选条件(logFC>2倍且P < 0.05)获得差异基因共计1352个,其中上调基因703个,下调基因649个。KEGG分析提示差异基因主要在PPAR信号通路、视黄醇代谢、脂肪酸降解等通路中富集(P < 0.05)。明显上调的差异基因主要有Cyp4a10、Cyp4a14、Acot1、Acot3、Ehhadh等,明显下调基因包括Adh4、dnajb11、hspa5、scn5a、apol10b等,经qRT-PCR验证趋势一致(P < 0.05)。 结论 HBV-Tg小鼠具有自发纤维化的趋势,经转录组学分析,CHB发生的潜在机制主要涉及PPAR信号通路、视黄醇代谢、脂肪酸降解、药物代谢等通路。

    Abstract:

    【Abstract】Objective To observe the characteristics of C57BL/6N-Tg (1.28mer HBV)/Vst transgenic Hepatitis B virus (HBV-Tg) mouse model and analyze the transcriptomic characteristics of HBV-Tg mouse model. Methods 10 male HBV-Tg mice were used as experimental group and 10 wild-type mice as control group. The level of HBV DNA, HBsAg, HBeAg in serum and the expression of HBsAg and HBcAg in liver tissue were used to evaluate the virological characteristics of the model mice. The levels of serum ALT, AST, HE, Sirius red staining and Hyp in liver tissue were detected to evaluate the degree of liver inflammation and fibrosis. Liver tissue samples from 3 mice in each group were randomly selected for RNA extraction for high-throughput transcriptome sequencing. The significantly expressed differential genes were obtained by R software analysis, the functional enrichment of differential genes was obtained by GO and KEGG analysis, and then the genes with significant differences were verified by real-time fluorescence quantitative PCR (qRT-PCR). Results Compared with normal group, ALT and AST levels in model group were increased, and ALT was more significant (P<0.05). HE staining of liver tissue in model group showed the enlargement of liver nucleus and swelling of some hepatocytes. The results of Sirius red staining showed that there was a small amount of collagen deposition in the sink area and interlobule of HBV transgenic group, which was in the shape of thin lines. A total of 1352 differential genes were obtained by screening conditions (logFC>2x and P<0.05), including 703 up-regulated genes and 649 down-regulated genes. KEGG analysis suggested that differential genes were mainly enriched in PPAR signaling pathway, retinol metabolism, fatty acid degradation and other pathways (P<0.05). Significantly up-regulated differential genes mainly included Cyp4a10, Cyp4a14, Acot1, Acot3, Ehhadh, etc. Significantly down-regulated genes included Adh4, dnajb11, hspa5, scn5a, apol10b, etc. The trend was consistent after qRT-PCR detection (P<0.05). Conclusions HBV-Tg mice have a tendency of spontaneous fibrosis.Transcriptomic analysis shows that the potential mechanism of CHB mainly involves PPAR signaling pathway, retinol metabolism,fatty acid degradation,drug metabolism and other pathways.

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  • 收稿日期:2023-08-08
  • 最后修改日期:2023-11-14
  • 录用日期:2023-11-15
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