基于网络药理学和孟德尔随机化探究异鼠李素防治肝纤维化的分子机制
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广西中医药大学

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国家自然科学基金(编号:82204755);广西自然基金(编号:2023GXNSFBA026274;2024GXNSFAA010235);广西壮瑶药重点实验室基金资助项目(编号:GXZYYKF2023-05);广西研究生教育创新计划项目(编号:YCBZ2024150);广西中医药大学赛恩斯新医药学院科研项目(编号:2024ZZA002;2024ZZA003;2024ZZB006;2024ZZB007;2024ZZB010)。


Exploring the molecular mechanism of isorhamnetin against liver fibrosis based on network pharmacology and Mendelian randomization
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guangxi university of chinese medicine

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The National Natural Science Foundation of China (General Program, Key Program, Major Research Plan)

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    摘要:

    摘要: 目的:探究异鼠李素防治肝纤维化的作用机制及核心靶点。方法:整合生物信息学数据,通过差异基因分析、加权基因共表达网络挖掘肝纤维化相关靶点,结合异鼠李素作用靶点筛选关键交集基因;利用机器学习优化核心靶点,并通过孟德尔随机化验证其因果关联;进一步通过分子对接、动力学模拟评估靶点功能。结果:筛选出肝纤维化与异鼠李素交互靶点113个,主要富集于PI3K-AKT、TNF等信号通路;机器学习联合孟德尔随机化锁定AHR、CASP3、MAPK14为关键靶点;多数据集验证显示其表达一致且诊断效能显著(AUC>0.7);分子模拟证实异鼠李素与靶点结合稳定(结合能<-7.0 kcal/mol)。结论:异鼠李素通过靶向AHR、CASP3和MAPK14调控炎症、凋亡及代谢通路,从而抑制肝纤维化,为中医药抗纤维化机制研究提供了新视角。

    Abstract:

    Abstract: Objective: To investigate the mechanism and core targets of isorhamnetin in preventing and treating liver fibrosis. Methods: Bioinformatics data were integrated to identify liver fibrosis-related targets via differential gene analysis and weighted gene co-expression network analysis (WGCNA). Key intersecting targets with isorhamnetin's action targets were screened. Machine learning optimized core targets, validated for causal association using Mendelian randomization (MR). Molecular docking and dynamics simulations assessed target function. Results: 113 interactive targets of liver fibrosis and isorhamnetin were identified, primarily enriched in PI3K-AKT, TNF, and other signaling pathways. Machine learning combined with MR pinpointed AHR, CASP3, and MAPK14 as core targets. Multi-dataset validation confirmed their consistent expression and significant diagnostic efficacy (AUC >0.7). Molecular simulations demonstrated stable binding of isorhamnetin to these targets (binding energy < -7.0 kcal/mol). Conclusion: Isorhamnetin inhibits liver fibrosis by targeting AHR, CASP3, and MAPK14 to regulate inflammation, apoptosis, and metabolic pathways. This study provides novel insights into the anti-fibrotic mechanisms of traditional Chinese medicine components.

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  • 收稿日期:2025-03-20
  • 最后修改日期:2025-06-30
  • 录用日期:2025-08-11
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